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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many sequenced by the JGI — so …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… developed chemiluminescent biosensors shed light on how bacteria function and colonize diverse environments. The … Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a … These 92 homologues were synthesized as codon optimized sequences and cloned into the Nano-lantern scaffold. Because …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … Varicosavirus ) which may severely reduce crop yields. Like the typical chytrids and other early-diverging fungi, … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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Extensive epigenetic reprogramming during the life cycle of Marchantia polymorpha
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The genomic standards consortium: bringing standards to life for microbial ecology
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The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
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Biodiversity of Magnetotactic Bacteria in the Freshwater Lake Beloe Bordukovskoe, Russia
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Distinct and rich assemblages of giant viruses in Arctic and Antarctic lakes
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Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota
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The diatom Fragilariopsis cylindrus: A model alga to understand cold‐adapted life
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Astrovirology: how viruses enhance our understanding of life in the Universe
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … resisted large-scale automated annotation due to features like self-splicing introns and multiple genetic codes. …
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