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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated … the third is determining the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given …
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Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis
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JGI Interns at UC Merced Earn CAMP Merit Awards
… As part of the ongoing partnership between DOE JGI and UC Merced to … in science and research, two undergraduate students from UC Merced recently had summer internships in Walnut … Research Symposium , held February 6 at the University of California, Irvine, Cristhian and Bryan were among 5 UC …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental samples. The Science A team led … JGI’s  Emerging Technologies Opportunity Program . The ETOP helps researchers develop technology that can then be made … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … into multiple interconnected layers. The architecture of these algorithms, inspired by communication networks …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes … maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Nandita Nath
… in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of … users — have access to high-quality, assembled datasets from all of this information. The JGI aims to create …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting … to be moved to private status. This will remove records from search indexes and BLAST databases until such time that …
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The More the Merrier: Making the Case for Plant Pan-genomes
… base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … genomes to a diploid state while retaining multiple copies of some genes. This polyploidization process is ongoing and …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a broad range of researchers and trainees who use JGI resources and … high-quality outputs, such as data, publications and software. The JGI supports the entire data life cycle, and …
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