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The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… RNA sequencing to understand gene expression: one of the first cross-kingdom spatially-resolved transcriptomics … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … other biological activity of the surrounding neighborhood,” said Benjamin Cole, senior author of this work. Cole is a …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and … of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which … geomics and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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A One-Stop Shop for Analyzing Algal Genomes
… algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many sequenced by the JGI — so researchers can easily explore the …
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The Expanding Universe of Methane Metabolisms in Archaea
… into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years … methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an email. “Therefore, determining under which form …
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JGI on the 2021 Highly Cited Researchers List
… are: Igor Grigoriev Natalia Ivanova Nikos Kyrpides Dan Rokhsar Simon Roux Jeremy Schmutz Susannah Tringe Tanja Woyke … research team that combined field data with a reference switchgrass genome to associate climate … Woyke appeared in a JGI Engagement Webinar on How to Successfully Apply for a CSP Proposal. She also co-organized …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… A: Anyone from anywhere around the world can apply to access the JGI’s resources. Q:  Where can I get information … the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A Method for Metabolite … can this team be of help to us in research design and execution? A:  Human health is outside of JGI’s mission. …
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Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes
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Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
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