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Microbial community analysis of three hydrocarbon reservoir cores provides valuable insights for the assessment of reservoir souring potential
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Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Initiative. Brassicales is represented by more than 4,700 species, and the proposal focuses on investigating the repeated evolution of three traits relevant to DOE interests: photosynthetic … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then …
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Mapping the Earth’s Hidden Fungal Kingdom
… organisms have diversified into an estimated 2–6 million species — dwarfing the diversity of plants. To put this … about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … for prediction of fungal lifestyles based on genome sequences.” The Fungal Knowledge Gap The fungal kingdom …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… hills and valleys, on a smaller scale. Depending on the species, some sphagnum may prefer the dryer, more elevated … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4
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Sequencing the fungal tree of life
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Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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JGIota: Looking Back at Sequencing for Soybeans
… So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples … at these gardens. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs)—the  Great Lakes … many parts of the country also helped the team understand why some switchgrass plants from the Northeast have traits …
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Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
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