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Micro-Scale Applications Group
… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …
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Genome sequence of Phaeobacter inhibens type strain (T5T), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters … of all the other letters of the alphabet. Yet the specific sequence of these four letters represents an organism’s … the binding location for most transcription factors in a species,” O’Malley said. “It’s a unique capability; no one …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led … Kellogg added, and shattering genes may be specific to species or groups of species.  The genome data also revealed …
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An analysis of codon bias in six red yeast species
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Phyllosticta citricarpa and sister species of global importance to Citrus
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Evolution and comparative genomics of the most common Trichoderma species
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Coniella lustricola, a new species from submerged detritus
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Amplification and adaptation of centromeric repeats in polyploid switchgrass species
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DNABERT-S: pioneering species differentiation with species-aware DNA embeddings
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), … count toward the 1Tb cap. PacBio metagenomes are currently sequenced without pooling, which yields ~ 180 Gb of data per …
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Remarkably coherent population structure for a dominant Antarctic Chlorobium species
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