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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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JGI Accepts 17 Proposals for Community Science Program
State University and colleagues are interested in the microbial communities that live on Alaska’s glacially dominated Copper … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity … including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, … the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect … National Laboratory, used single-cell sequencing to sequence both a cell’s genome and detect accompanying viral …
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Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
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Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA
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Genomic sequencing of single microbial cells from environmental samples
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Corals in Hot Water Get Help From Their Microbes
As waters warm due to climate change, corals are in mortal peril. But corals comprise …
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The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
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