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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline

Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, …

Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus

Comparative and transcriptional analysis of the predicted secretome in the lignocellulose‐degrading basidiomycete fungus Pleurotus ostreatus

The obligate alkalophilic soda‐lake fungus Sodiomyces alkalinus has shifted to a protein diet

An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots

Transcriptomics of Temporal- versus Substrate-Specific Wood Decay in the Brown-Rot Fungus Fibroporia radiculosa

Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. citricarpa based on phylogenomic analyses

High phenotypic and genotypic plasticity among strains of the mushroom-forming fungus Schizophyllum commune

Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores

Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose

Marine Microbe Contains Multitudes

A deep dive into microbial genomics reveals one bacterial … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … ecotypes because, historically, they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA …

Sequence to Function: Applications and Analysis for the Future (SFA²F)

The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together …

Lawrence Berkeley National Laboratory is a U.S. DOE Office of Science
national laboratory managed by the University of California.