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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research … and potential applications. … The Department of Energy Systems Biology Knowledgebase (KBase) is involved in the … in  Frontiers .   … Objective … What is MycoCosm? … Myco-Ed Partnerships … Are you or your institution interested in …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
The majestic sentinel oaks of the Golden State have been succumbing to a pathogen. This ‘“alien’” organism — one … for injecting a solution that bolsters the immune system of oaks and enables them to fend off the effects of … Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis . …
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John Vogel
… pipeline and, in collaboration with industrial partners, generated hundreds of transgenic switchgrass lines … in an effort to create improved varieties for biomass production. He did his postdoctoral studies at the Carnegie … Grass Brachypodium distachyon.  Nature. 463: 763-768 … 2018-present Member, EcoFAB steering committee 2014-present …
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Who We Are
… team science and collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data …
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AmiGO: online access to ontology and annotation data
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and … The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They looked …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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Science Programs
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JGI User Executive Committee Expands
… these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New Investigator … families to understand enzyme activity. As another early career researcher on the UEC, she is interested in creating … Research Centers. Sogin is a microbial ecologist at UC Merced, where her group focuses on the interactions …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, along with … a large-scale genome infrastructure with a reasonably accessible system,” said Schmutz. “Building the pan-genome and accessions …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… access ecological data to better understand how U.S. ecosystems are changing.  Through the  “Facilities Integrating … the  Environmental Molecular Sciences Laboratory (EMSL) , successful applicants can also access resources at NEON. This … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Forming Scientific Connections and Building Community
… and what they’ll take with them as they go forward in their careers.   Listed below are the interns, their mentors, and … Project: “ Development of a multiplex genomic integration system for the selection of genes essential for specialized … innovative environment where collaboration and research discovery are at the forefront.” Mentors: Rex Malmstrom, …
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