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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone … Mitchell (Neochromosome) have worked to replace yeast’s native chromosomes with synthetic versions. This project has … the goal is to create an entirely human-generated yeast genome. …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … – Sphagnum fallax and S. magellanicum. The draft genome for  S. fallax is already available on the  JGI plant …
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Metabolomics
…   Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this identification, metabolomics enables functional genome annotation, improves understanding of the role small …
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Community Science Program
… Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy … Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the … City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … soon after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … and importance in the fabric of our lives. In the United States, cotton production centers around two varieties: 95 … darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to … assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, nutrient … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This means it contains more than two copies of the genome , which can have pronounced ecological and …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of the browser, the team used  Fermentation Explorer ( GitHub ) with a series of large datasets. One test was to …
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