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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … that identifies and classifies mobile genetic elements based upon their gene content and their genetic sequences. …
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Whole genome sequence of the denitrifying thermophile Geobacillus thermodenitrificans subsp. calidus DSM 22629T
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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A chromosome-level genome assembly of the varied leaved jewelflower, Streptanthus diversifolius, reveals a recent whole genome duplication
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Natural Prodcast Episode 22: Alison Narayan
… enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us … about making them. So I really came at it not necessarily based on the biology really just from as a simple organic … the help of JGI’s DNA synthesis grant. And that having a whole panel of these enzymes allows us to ask the questions …
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Comparative and pangenomic analysis of the genus Streptomyces
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … technology in order to enhance the quality of single-cell genomes and directly link functional information with …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … Q: How exactly EcoGroups are built? A: EcoGroups are built based on what is known about the organism’s ecology, mostly … While are still working on finalizing the tree and related publication the tree is still in development and not …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       …
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Whole genome assembly from 454 sequencing output via modified DNA graph concept
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Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale
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Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
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