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Partners
The JGI leverages its existing partnerships and develops others providing … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to datasets, …
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Natural Prodcast Episode 22: Alison Narayan
… … DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. … so starting from some of the enzymes that we had the most data on and knew the most about, working with my … You can really design your experiments in a way that’s data rich, and you can really just learn so much, which then …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome … recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished …
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Prepublication data sharing
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Clustering Categorical Data
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, and refining … … The SMC provides complete sequence and annotation data for secondary metabolite biosynthetic gene clusters …
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Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you … this project too. I’m really looking forward to seeing the data when it finally gets off the sequencers. The pandemic … developing a new resource Bill and Paul Jensen’s classic review on exploring marine actinomycetes for drug …
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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples
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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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