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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Sequencing Submission Requirements for DNA Synthesis
… Sequence files for all constructs should be emailed to  Miranda … GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank …
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Natural Prodcast Episode 1: The Primer, Part 1
… Takemura, whose voice you’ll hear in a minute – we work for the US Department of Energy Joint Genome Institute, or … environment – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe …
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An Integrative Computational Approach for Prioritization of Genomic Variants
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … the feed, the secondary metabolism field has been dominated for … well, as long as I can remember, by bacterial … So it was great to hear her passion and enthusiasm for fungi. And we talk a lot about some of the technical …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only … to convert her biological observations into a practical computational application,” said Grigoriev, Wint’s other …
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
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A perspective: Metatranscriptomics as a tool for the discovery of novel biocatalysts
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ProDeGe: a computational protocol for fully automated decontamination of genomes
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … National Laboratory, he developed and applied novel computational and experimental sequence-based methods for …
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