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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a scientific … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … a gene sequence-based predictor of gene expression levels using machine learning tools. “This was very exciting to see …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid … with popular, but computationally costly approaches such as BLAST and hidden Markov models (HMMs), “You just compute the …
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Community Science Program
… The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are among … influence in their chosen field or fields through the publication of multiple highly cited papers during the last …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the … community as a user facility pioneering functional genomics to solve the most relevant bioenergy and environmental … Reviewers consider technical feasibility and readiness to begin work, checking such factors as genome size, …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of … algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. Book a …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata … larger by dry weight than without PM193  . By contrast, using a different endophytic fungus,  Ilyonectria europaea , …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is … Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure to facilitate these …
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A Guide to Gene‐Centric Analysis Using TreeSAPP
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a … user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff … user facility located at Lawrence Berkeley National Laboratory ( Berkeley Lab ), and part of the Biosciences Area. The …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI recognized for … influence in their chosen field or fields through the publication of multiple highly cited papers during the last …
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