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Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
Ancient  Chloroflexota s ditched their flagella and other … flagella would be a liability in open water — requiring more energy for the bacteria to orient and swim than they … could have the ability to manipulate plant growth.   Across the phylum, diverse  Chloroflexota show the ability …
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Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
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Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean
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Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome … bioinformatic tool development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, … Award for Research Excellence … Education … Selected Publications … Awards and Honors …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from … world. These tools give researchers a way to access much more information about fungi in these environments. “Now … these trophic guilds, this team focused on three main groups of fungi that appeared in all forests they sampled. …
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Simon Roux
… dynamics in soil microbial communities. … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data … inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiology 4, 1895–1906. … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes we've … is a wake-up call to revive the art of hands-on microbiology and experimental validation.  Microbes run the …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science … At the JGI, Dr. Yoshikuni also manages the Synthetic Biology Pathway Engineering group. His research focus includes engineering of non-model … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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Learning to Look
Machine learning approach significantly expands inovirus … these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of … virome associated with nearly all bacterial phyla across virtually every ecosystem.” By significantly …
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