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The genomic standards consortium: bringing standards to life for microbial ecology
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … annotated genome has been updated to a high quality modern standard and includes RNA-seq data. The improved  T. cacao … of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome annotation …
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A single-cell genomics pipeline for environmental microbial eukaryotes
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … in that area?   NANCY: Oh, well, I love fungi, okay, this doesn’t even have anything to use natural products … actually, everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more … The Deputy of Genomic Technologies serves as the JGI’s primary point of …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of achieving a predictive understanding of complex … that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, …
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SIPs with Standards
… catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to … ways they're working to make this technique, SIP, more standardized -- more reproducible, more reusable, and more …
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JGI on the 2021 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … biology. The information could be useful toward the DOE’s interest in harnessing the crop toward producing …
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … Ford (Operations Area Deputy/Berkeley Lab Deputy Chief Operating Officer). “You define the word ‘collegial’” “Every … before the event segued to remarks by the leadership of the DOE Office of Biological and Environmental Research: …
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