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Genome sequence of the model rice variety KitaakeX
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Genome sequence of the model mushroom Schizophyllum commune
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … genomes. The team first applied the workflow to a curated reference set of over 300 genomes spanning the fungal …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … Institute for Agricultural Research (INRAE) to sequence a reference genome for the fungus Phakopsora pachyrhizi , a …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Brachypodium: A monocot grass model system for plant biology
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership … genome science capabilities to support BER's mission of achieving a predictive understanding of complex … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … research. “What I have told our growers is, ‘Think of these reference genomes as a surgeon’s knowledge, and of gene …
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Genome sequencing and analysis of the model grass Brachypodium distachyon
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … products field as it relates to structure elucidation and genome mining, and how we might start to better connect … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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EcoBOT: an AI/ML enabled automated phenotyping capability for model plants
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