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JGI Scientists Pen Genome Watch Articles
… Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and domestication of yeast , a model eukaryote. The wide array of topics comes from the authors’ interests, says … to (meta)genomics, and at least one of the papers they reference should be hot off the press. She tells prospective …
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … While are still working on finalizing the tree and related publication the tree is still in development and not … Q1. Are all based on PFAM classification-only and/or other reference DB (citable)? Q2. Is it possible to download these …
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Open Frameworks Training the Next Generation of Scientists
… scientific contributions—including sequencing services and analysis—to participants. Over the past two years, Myco-Ed … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … and genomics. Fungi can be better understood through reference genomes, but unfortunately there are not many …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden … receive a lot of rain.  Previous analysis of the E. grandis reference genome, an international effort by a team that … eucalypt genomes to establish the feasibility of genome wide association studies for genetic traits that are …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Examples: Successful LOIs & Submissions
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … research. “What I have told our growers is, ‘Think of these reference genomes as a surgeon’s knowledge, and of gene …
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Mapping the Earth’s Hidden Fungal Kingdom
… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … able to leverage nearly 2,000 genomes to construct kingdom-wide evolutionary trees and overlay them with genomic …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … funded through the National Institutes of Health’s (NIH)  Common Fund Human Virome Program .  Nikos Kyrpides , head of … University. The CODCC aims to coordinate data acquisition, analysis, and visualization through a sustainable, …
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A haplotype-resolved reference genome for Eucalyptus grandis
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … collapsed, while these issues are not commonly seen with reference isolates. “For secondary metabolite discovery in … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using … Joint BioEnergy Institute —have expanded the network of common gardens and are exploring improvements to switchgrass …
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