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Integrating Experimentation with Data
… (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating Experimentation with Data.” The event will take place at the Seattle Marriott … Seattle, Washington.   Topics will include:  environmental microbiomes biodesign and synthetic biology AI/ML-enabled …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily … microbes , scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. … more complete and evenly covered genomes when tested in human cells. To see if this method could also improve genome …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial and … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
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Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
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Project Management Office
Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of … of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …
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Microbiome Data Science: Understanding Our Microbial Planet
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Nikos Kyrpides
National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data … compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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University of California, Merced Internship Program
… at the JGI, the Genomics Internship Program soon expanded to include undergraduate students. To date, more than 80 UC Merced students have contributed to the research of numerous JGI scientists. Interns say …
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Game On: High School Students Drive Everglades Metagenomics Study
Florida Everglades ecosystem. There are no roads or real human traffic through this remote part of the Everglades. … training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Plant-Microbial Interactions Group
… terrestrial world. Research Team    … Plant microbiomes hold the amazing ability to influence plant … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Alabama Agricultural & Mechanical University Internship Program
… their scientific skills and collaborating with their mentors and fellow interns. Inspired by the success of the UC … program, they left the JGI more confident and ready to tackle real-world scientific issues. Our interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and …
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