Results

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats
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Genomic sequencing of single microbial cells from environmental samples
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Individual genome assembly from complex community short-read metagenomic datasets
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Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio
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Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
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Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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Katherine Louie
DNA-SIP for helping identify active micro-organisms within complex communities, and custom software for integrating … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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One Bacterial Cell, One Complete Genome
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