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Secondary Metabolites Program
… Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory … We have developed Regulon Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … team then extended their analysis beyond the reference set, using two additional approaches. To search environmental … IMG portal for mitochondrial ribosomal RNA sequences. The next step applied metagenomic binning (grouping sequencing …
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … Chief Informatics Officer Len Pennacchio, Deputy of Genomic Technologies Axel Visel, Deputy for Science Programs Tanja …
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
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Bacillus anthracis genome organization in light of whole transcriptome sequencing
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Olpidium, The Key to the Origin of Terrestrial Fungi
… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … from Agri-Food Canada at Summerland BC aimed to generate whole genome data of Olpidium. This required an enormous … re-visit the Olpidium genome data . Taking the advantage of rapid development of binning methods, we were able to …
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Mutations in the predicted DNA polymerase subunit POLD3 result in more rapid flowering of Brachypodium distachyon
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The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … sequence in hand, the UC team led the charge to develop rapid diagnoses for SOD. These techniques were also …
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Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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