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Natural Prodcast Episode 19: Bill Fenical
… why it’s so hard to succeed, and we talk about an ongoing project I’ve been working with him on as an exploration into … the most effective application, of marine molecules in general. DAN UDWARY: Maybe can you explain to our audience … found out all kinds of weird things. Glucose is toxic to a large number of marine bacteria. Do you believe that? I …
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Cataloging the Microbes that Manage the Health of River Systems
… resource that provides information at multiple scales from genes to the community level. The Impact Rivers are … several access points for these datasets. As part of a larger microbiome data integration hub, these datasets are … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can …
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Natural Prodcast Episode 7: Ben Shen
… technology to help access complicated natural product gene clusters, and we’re all really excited about that, and … I’m very happy to talk to you. And so this is the third international meeting on natural products, but as a new, I call … benefits. DAN: Now, you and I are working together on a project at the JGI to try to find new enediyne clusters and …
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Marine Microbe Contains Multitudes
… fluxes in the environment. Moreover, the deep ocean is the largest inorganic reservoir of carbon on earth; because … to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known …
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A data analysis and coordination center for the human microbiome project
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University of California, Merced Internship Program
…   Revisit past projects …
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Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.)
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the … of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these …
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Statement on the Use of Genomics Data
… the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the principles for open … JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to NCBI as well as … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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Operating Expenses
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC … in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and … that unlike most flowering plants and animals, fungi lack gene body methylation. The analysis revealed that 5mC in …
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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