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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … Joint Genome Institute, Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated … large-scale comparative analysis, as well as mining and visualization of big data. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … While most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside DNA to the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … requirement, for culturing, and then of course using modern phylogenetic tools measuring genes, the 16S gene, and … by Bristol Myers Squibb. And it is now in phase III in multiple sites, phase III human clinical trials. ALISON …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference … of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient … Innovation, which is supported by the U.S. Department of Energy, Office of Science, Office of Biological and …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain sequences of DNA, … Purdue, about bacterial signaling molecules and regulation of biosynthetic pathways, student mental health, and getting …
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First Monoploid Reference Sequence of Sugarcane
… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they are “polyploid”) and … artificial chromosomes (BACs), vectors that can hold large DNA segments such as an entire sugarcane gene and its …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of Energy …
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Accelerating Metagenomics Discoveries with Deep Learning
… deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms organized into multiple interconnected layers. The architecture of these …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on individual … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Simple and Rapid Site-Specific Integration of Multiple Heterologous DNAs into the Escherichia coli Chromosome
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Multiple displacement amplification compromises quantitative analysis of metagenomes
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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