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Identifying genomic data use with the Data Citation Explorer
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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The IMG/M data management and analysis system v.7: content updates and new features.
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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Partners
… our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant …
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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