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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to … Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data …
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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly
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From Competition to Cooperation
… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how … , the work was led by a consortium of researchers from the French National Institute for Agriculture, Food and …
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JGI@25: From Life at the Extremes to Editing Genomes
… Max Planck Institute! This is the first science Nobel awarded to two women, with Charpentier and Doudna bringing the … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … of fungal mitochondrial genomes — the DNA found inside mitochondria, the energy-producing structures within … all fungi, and found that some of these genes have moved from the mitochondria into the nuclear genome over …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this … With respect to documents available from this server, neither the United States Government nor … any specific commercial products, process, or service by trade name, trademark, manufacturer, or otherwise, does not …
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Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
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Webinar: MycoCosm Tutorial
… data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. … but we also annotated several Phytophthora genomes; this depends on the scientific questions asked and whether they … While are still working on finalizing the tree and related publication the tree is still in development and not …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … This work was partially supported by awards from US Department of Energy (DOE) Office of Science, Office of …
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A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters
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