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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.   …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … to maximize returns on these advances. Over the last two decades, Stable Isotope Probing (SIP) has opened vast …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. … genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine if these … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written … requires rigorous research, written skill, above all else, determination. Rhondene Wint, an alumna of the DOE Joint … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my …
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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently appeared in  Nature …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Roux , the Viral Genomics Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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