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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
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Development of simple sequence repeat markers for the soybean rust fungus, Phakopsora pachyrhizi
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Data Ecosystem
… A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. … to seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to …
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Game On: High School Students Drive Everglades Metagenomics Study
… that the project had already received enthusiastic support from the JGI Director, Nigel Mouncey. Jonathan credits his … the soil and acquire the permits to do so. They used images from Google maps to plan their route, and had to adapt when … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… the University of California, Riverside and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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DAS Tool for Genome Reconstruction from Metagenomes
… and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … isolating and characterizing entire microbial genomes from sequences generated from environmental samples. The work … enhance the ability to assemble often-fragmentary DNA sequences from environmental samples of very complex …
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Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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Metabolomics
… JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … molecular profiles are generated for metabolites extracted from a variety of experimental samples, including organisms … more about our submission guidelines, what you can expect from your results as well as our library standards. …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … them. Despite advances in the years since this landmark publication, SOD continued to sweep through dozens of …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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