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A toolkit for microbial community editing
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Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior …
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Forming Scientific Connections and Building Community
… : “The best part of the internship is the welcome and open community of the JGI. Everyone is excited to learn and share … W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great … to give presentations of their work at the recent JGI Annual Meeting. Through the DOE RENEW initiative, three of …
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Photochemical alteration of organic carbon draining permafrost soils shifts microbial metabolic pathways and stimulates respiration
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside … MycoCosm — a platform widely used across the research community — the work lowers technical barriers for …
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Game On: High School Students Drive Everglades Metagenomics Study
… of Education (AICE) Biology class at Florida’s Boca Raton Community High School. The course had a defined set of … partnership. The class decided to do an environmental microbial community (metagenomic) soil study in an untouched … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the … access points to the information. The team harnessed a community-science program to collect samples from across the …
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High-resolution phylogenetic microbial community profiling
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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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Insights into the bacterial community and its temporal succession during the fermentation of wine grapes
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