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DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor
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Divergent cytosine DNA methylation patterns in single‐cell, soybean root hairs
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Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms
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Three Join the JGI User Executive Committee
Laboratory, Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” Wilbanks of the University of … as Secretary within the Microbial Ecology Section of the Ecological Society of America and is also a National … user facility operations and expertise in mass-spectrometry-based metabolomics and lipidomics to make recommendations to …
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Tracking the Origins of Methane-Producing Microbes
All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); methylotrophic; and, acetoclastic. All three pathways … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. … within the Thermoproteota phylum —  Korarchaeia and  Methanomethylicia   — grow by methanogenesis. Both studies were … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Institut Pasteur in France, the importance of methanogenesis and the presence of methanogens in nearly all … set of genes present in archaea with metabolisms involving methyl-coenzyme M reductase (MCR), the final step in … abundant populations detected in the Washburn sediments and based on metabolic reconstructions, the team has two main …
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Frederik Schulz
Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research … LDRD-funded project, Dr. Schulz established a single-cell-based discovery pipeline and enrichment metagenomics for … academic achievements (2008) … Education … Selected Publications … Awards and Service …
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A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
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Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales
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Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics
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Zhong Wang
Research in the Analysis R&D group focuses on developing new bioinformatics … assembly, metagenome and metatranscriptome assembly, Hadoop based on sequence analysis framework, etc. For example, this … metagenome binning software … Education … Selected Publications … Software …
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