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Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
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Industry Engagement Program
… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the JGI’s portfolio of user companies. Now the Department of Energy is uniting National Labs and industry, including … funded by an industry partner to perform a defined scope of work using the JGI’s unique facilities, equipment, and …
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Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil
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A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
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Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated … more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Optimized CRISPR Interference System for Investigating Pseudomonas alloputida Genes Involved in Rhizosphere Microbiome Assembly
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Complete genome sequence of Thermosphaera aggregans type strain (M11TLT)
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … role in regulating microbial cellulose production and biofilm formation, which affects a number of environments, … colonization, which can affect pathogenic and symbiotic bacterial interactions with animals and plants, or cause …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a … begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … samples, they reconstructed and examined over six hundred bacterial genomes — mainly actinobacteria, as well as …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of with …
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