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Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups
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Bacterial Genome Annotation
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
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Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …
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Genomic comparison of deep-sea hydrothermal genera related to Aeropyrum, Thermodiscus and Caldisphaera, and proposed emended description of the family Acidilobaceae
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Identification of novel biomass‐degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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