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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single … just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … support, how much help can users expect for data analysis of the different omics analysis? Are users expected …
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IMG/M: integrated genome and metagenome comparative data analysis system
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Webinar: MycoCosm Tutorial
… A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated several Phytophthora … While are still working on finalizing the tree and related publication the tree is still in development and not … (are these functional annotations) and how are these integrated within the platform? A: Please contact the …
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PhycoCosm, a comparative algal genomics resource
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of … periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, … software suite, BBTools , and relying on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response
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Improving Microbial Genome Annotations in an Integrated Database Context
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Cataloging the Microbes that Manage the Health of River Systems
… a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … be the first publicly available, river-focused microbial resource that provides information at multiple scales from … and the University of Colorado Anschutz’s Genomics Shared Resource. The work (proposal 10.46936/10.25585/60001289) …
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IMG/M 4 version of the integrated metagenome comparative analysis system
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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