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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … one of the world's most comprehensive collections of fungal genomes. A sweeping analysis published in Nature Reviews … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a … hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and …
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Marine Microbe Contains Multitudes
… microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … A: Watch the video (above) for the answer provided by Sara 4.  Q(uestion): Are all CSP produced data automatically … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … var. hallii (99.2% complete) and P. hallii var. filipes (94.8% complete) and resequenced a host of natural collections … sites for experiments. This work was funded by NSF/IOS-1402393 (JTL), NSF/IOS-1639872 (JTL/TEJ), NSF/IOS-0922457 …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and … the phenotypic records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal …
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Silver age of GOLD introduces new features
… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, enhancing genome annotations and promoting … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
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Analyze Data
… The JGI is involved in efforts to integrate data in support of new research questions that span domains. We also work with our partners to build infrastructure in support of new analysis techniques.  … Chief Informatics Officer …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … marine natural products. And was at the university for over 40 years. There were four of us as kids in the family. I was … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . …
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