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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers … to help researchers assess and improve the quality of metagenome-assembled viral genomes . The Impact The …
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Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla
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Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
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A global atlas of soil viruses reveals unexplored biodiversity and potential biogeochemical impacts
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Tanja Woyke Elected to American Academy of Microbiology
Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … that reconstructed more than 2,000 genomes of large and giant viruses belonging to the nucleocytoplasmic large DNA … space grew from 123,000 to over 900,000 proteins, and virus diversity in this group expanded 10-fold, offering the …
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Doubling Down on Known Protein Families
… novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing a …
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Petra Byl
… researcher who cultivates marine algae infected by giant viruses from subtropical, oligotrophic ocean gyres. She uses …
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Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil
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Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … discussions on how to capture and characterize viral diversity, understand the role of viruses in natural … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …
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Rex Malmstrom
Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . 9 (1), 4881 … dissertation in life sciences 2006 … Education … Selected Publications … Awards and Honors …
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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
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