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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking statuses.  Please follow the steps outlined … prior to shipment to the  JGI. The documents below (posted with permission) demonstrate the importance of proper …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… artificial intelligence to aspects of research questions Another intern summer has closed at the U.S. Department of … and technical writing while also making new connections with both researchers and other interns. At the end of the … Terasaki Mentor: Yumary Vasquez Project:  AI Agent for Giant Virus Research Mohammad Abdulqader Mentors: Andrei …
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Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data … and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … we’re going to be presenting some conversations we had with scientists in the field of natural products. So, it’s a … Episode Transcript … This is episode 4 of Natural Prodcast, our interview with Dr Nancy Keller from the University of Wisconsin, …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … including project types supported, sample/capacity limits, and instructions.  Many of the submissions are done using …
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Genomic Mysteries of Giant Bacteria: Insights and Implications
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … because I really enjoyed the review that you wrote with Marnix on putting that stuff together. It’s been kind … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has … no. DE-AC02-05CH11231. The UT Brackenridge Field Lab and the Ladybird Johnson Wildflower Center provided support …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface … are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … and dominant populations in oxygen-poor environments without oxygen deep below ground. These archaea fix carbon …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends govern those … inside the host’s genome, living quietly and replicating with their host indefinitely. Now, in studying a microbial … by the NASA Astrobiology Institute Rock Powered Life grant. RS is supported by NSF grants DEB-1441717, OCE-1335810, …
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