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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. The … is thought to have played a key role in the development of life on Earth; the iron-oxide microbial mats at Yellowstone … archaeal lineages, the team relied on a combination of phylogenomic analyses, transcriptomics for microbial genomic …
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The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Virus species names have been standardized; virus names remain unchanged
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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing environments better? We could unlock … genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Tanja Woyke
… University Tübingen (Germany), Dr. Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. … was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, …
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … larger eukaryotic microbes!” It’s one of my missions in life to get people to think more about fungi.    ALISON: … every environment you can think about.   DAN: What kind of genomic resources are available these days for the natural …
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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation
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