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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … due to features like self-splicing introns and multiple genetic codes. Adding to the challenge, mitochondrial … search environmental data, they developed a two-stage metagenomic detection pipeline: First, they scanned over 26,000 …
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Learning to Look
… to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … As their small genomes can be easily manipulated through genetic engineering, inoviruses are used for several … expanding the known diversity of these viruses, genomic analyses led the team to propose that the Inoviridae should …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … for culturing, and then of course using modern phylogenetic tools measuring genes, the 16S gene, and comparing … in the process. We now have cell pellets. And we’re pulling genomic DNA out of those cell pellets. So, we’re about ready …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … completely unsampled. This creates a bottleneck: Without genetic blueprints from diverse fungi, researchers struggle …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … they need. Karolina is working to better understand what genetic features make CAM possible. So, she’s studying …
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JGI & KBase at PAG XXVII
… how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January … Update 6:33 PM Comparative Genomic and Transcriptomic Analyses for Bioprospecting in the Green Lineage using KBase …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant … than any individual genome highlighting the fact that the genetic information in a single reference genome is …
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Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi
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