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Learning to Look
… to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … As their small genomes can be easily manipulated through genetic engineering, inoviruses are used for several … expanding the known diversity of these viruses, genomic analyses led the team to propose that the Inoviridae should …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … for culturing, and then of course using modern phylogenetic tools measuring genes, the 16S gene, and comparing … in the process. We now have cell pellets. And we’re pulling genomic DNA out of those cell pellets. So, we’re about ready …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to … they need. Karolina is working to better understand what genetic features make CAM possible. So, she’s studying …
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Synthesis
… automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate hypotheses generated from mining genomic data by designing and assembling physical DNA … CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant … than any individual genome highlighting the fact that the genetic information in a single reference genome is …
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Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research … sequenced mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …
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Plant–microbiome interactions: from community assembly to plant health
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Genome‐based evolutionary history of Pseudomonas spp
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Picking Up Threads of Cotton Genomics
… authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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