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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be spotted with a striped … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to …
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … in sequencing technologies have led to an abundance of microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … to!   DAN: No, I think your stuff was really important to forming my concepts of what – at least outside of working … every environment you can think about.   DAN: What kind of genomic resources are available these days for the natural …
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The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
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Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. S.C., B.K., and I.V.G. were supported in part …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for … offering an unparalleled platform for exchanging ideas, forming collaborations, and charting the future of microbiome science. Organizers The EcoFAB 2025 Conference is organized by the EcoFAB Steering …
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The Genome of Polaromonas sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology▿ †
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  Miscanthus sinensis … its prodigious capability for growth. While many desirable features of biofuel grasses can be studied from simpler (and …
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … decided to do an environmental microbial community (metagenomic) soil study in an untouched region of the … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … 10 to the negative 9th. Picomolar, 10 to the negative 12th. DAN: Yeah. So very-- BETSY PARKINSON: Very, very-- … is you will mix together your receptor of interest with genomic DNA, and then allow that to bind. Your receptor also …
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