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Salt tolerance of two perennial grass Brachypodium sylvaticum accessions
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Patterns of pan‐genome occupancy and gene coexpression under water‐deficit in Brachypodium distachyon
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Natural Prodcast Episode 18: A CSP Primer
… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … Science program. It used to actually stand for Community Sequencing Program. Also CSP, same acronym. But as JGI, as a … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers of …
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Root morphology and exudate availability are shaped by particle size and chemistry in Brachypodium distachyon
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Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
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BdRCN4, a Brachypodium distachyon TFL1 homologue, is involved in regulation of apical meristem fate.
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – to get … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … evolutionary processes. The team then extended their analysis beyond the reference set, using two additional … The next step applied metagenomic binning (grouping sequencing reads by their likely organism of origin) …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support … and novel automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, …
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Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation
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