Results

Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Cyanobacterial-based approaches to improving photosynthesis in plants
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Sequencing crop genomes: approaches and applications
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Novel approaches in function-driven single-cell genomics
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Multiplex Editing of the Nucleoredoxin1 Tandem Array in Poplar: From Small Indels to Translocations and Complex Inversions
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … samples to the JGI. PI sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … support from the  Exascale Computing Project , the JGI — along with the National Energy Research Scientific Computing … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricumtype E strains
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Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions
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An Integrative Computational Approach for Prioritization of Genomic Variants
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Genomic approaches to accelerate American chestnut restoration
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the DOE Joint … the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors Yi Zhai and John … lab. We've been focused on analyzing plant microbiome data using different programming languages such as Python, Bash, …
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