Search

… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … plant species. It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint … descriptions from nearest phylogenetic neighbors. Our pipeline allowed us to add expression-derived additional …

… Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? … samples move through QC and into the library and sequencing pipelines.  You will receive automated emails as raw …

… For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … Armaleo and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US Department of Energy … Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available online at  PhycoCosm …

… cutting-edge capabilities to help advance their science by generating data in three overarching categories: DNA …

… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year … biofuel grasses can be studied from simpler (and smaller) models, Miscanthus has a large and complex genome whose …

… DNA is manually separated into a few different groups based on its density — DNA containing isotopes is “heavier” … National Laboratory and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … National Laboratory, have developed a semi-automated pipeline to apply robotics to the process. This automation …

… Wednesday, March 18: "Genomics of Environmental Opportunism: Fungal Adaptation at the Edge of Pathogenicity" Workshop … Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 Fungal Genomes and Phenotypes" …

… Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated … strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … soil carbon storage during simulated range shifts of plant-fungal symbionts …

… So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — but not …

… and 200 polar/500 nonpolar metabolomics samples, and should generally conform to the guidelines for our  CSP Large Scale … are strongly encouraged to contact the JGI to determine general feasibility prior to submitting a BER proposal that … The JGI is inviting researchers using the U.S. Culture Collection Network (USCCN) to …