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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample … They chose this location because much is unknown about the diversity of organisms (taxonomy) and particularly those in … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the … genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be cultivated under … and it gives us new insights into microbial diversity and function.” He is already finding ways to utilize the catalog …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … code, or genome, which underlies physical features and functions. Making connections between the structures and … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together established and emerging scientists from academia, industry, and government organizations for …
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Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… the algae-associated microbiomes that influence algal diversity and gene expression. Sailing from pole to pole on … properties,” said study coauthor Igor Grigoriev , JGI Fungal & Algal Program Head. “But still, there are no … like antibiotics, pharmaceuticals, and novel enzymes that function at low temperature.” said Katrin Schmidt, co-lead …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing … awards DEB1840243, EAR1836768 and DEB1457794. Funding support also was provided from Colorado State …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … break down the components of plant cell walls, which range from simple to complex carbohydrates, and then convert them … This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  …
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The distribution, diversity and function of predominant Thermoproteales in high‐temperature environments of Yellowstone National Park
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Extreme Scale De Novo Metagenome Assembly
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been important in early … tools and techniques applied to samples collected from acidic iron-oxide microbial mats in Yellowstone … DNA sequence from just a few pieces of DNA. Summary The extreme environments found in Yellowstone National Park …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … phenotypes, which validate traits.”  “The number of lines sequenced is not trivial, and they were all assembled de … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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