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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US … States. They also provided multiple access points to the information. The team harnessed a community-science program to … were also funded under the RC-SFA at PNNL by DOE BER ESS. Metagenomic and metatranscriptomic sequencing was performed …
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Fungal diversity and function in metagenomes sequenced from extreme environments
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… … DAN: All right. Welcome back to Natural Prodcast. I did it. … not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain …
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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Metagenomics
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the … nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of … I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … is providing, which is a giant warehouse full of microbial sequences. So let’s say you’re interested in improving a …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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