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David Goodstein
… genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors. Nature … 2017.  Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure. … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Forming Scientific Connections and Building Community
Mentors: Yi Zhai & John Vogel Project: Characterization of Brachypodium distachyon root transporters in plant-microbiome … gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : “It’s been great having been able …
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Disclaimer
NOTICE Information from this server resides on a computer system … the United States Government nor the University of California nor any of their employees, makes any warranty, … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. Accordingly, the U.S. Government retains a …
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Natural Prodcast Episode 12: Nadine Ziemert
… welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Natural Prodcast Episode 17: Cassandra Quave
… without giving any benefit back to the owners of that genetic material? So this is also relevant to bacteria. If … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … identifying their roles within these complex communication systems across kingdoms of life. ALISON TAKEMURA: OK. This …
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A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem
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Repeated migration, interbreeding and bottlenecking shaped the phylogeography of the selfing grass Brachypodium stacei
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … Fungus” and that are publicly available at the Fungal Genetics Stock Center. This work was supported by an Energy …
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Secondary Metabolites Program
… algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … uncover these hidden biochemical resources by exploring the genetic pathways responsible for their synthesis. The … by their native hosts. We are developing cell-free based systems to express BGCs that alleviate the constraints of …
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The foxtail millet (Setaria italica) terpene synthase gene family
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A novel open-source cultivation system helps establish the first full cycle chemosynthetic symbiosis model system involving the giant ciliate Zoothamnium niveum
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Workforce Development & Education Outreach
The JGI aims to inspire more students to enter the STEM workforce by fostering an understanding of our role in advancing … partnership that started in the summer of 2014. … Modeled on the JGI-UC Merced internship program, a similar … from high school to community college. … University of California, Merced … Alabama A&M University … CalTeach … Biotech …
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