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JGI Portals
Our data platforms are a key resource for the broader scientific … and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … is a wake-up call to revive the art of hands-on microbiology and experimental validation.  Microbes run the … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in … analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had … mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is the Metabolomics … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … Wood-Charlson, User Engagement Lead for the DOE Systems Biology Knowledgebase (KBase), as well as researchers from …
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Alignathon: a competitive assessment of whole-genome alignment methods
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Reply to: Examining microbe–metabolite correlations by linear methods
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A simple, fast, and accurate method of phylogenomic inference
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MAGI: A Method for Metabolite Annotation and Gene Integration
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved … strategy for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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