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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast landscape of gene regulatory sequences in the human genome. Understanding how variation …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Genomic basis for the unique phenotype of the alkaliphilic purple nonsulfur bacterium Rhodobaca bogoriensis
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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Rapid whole-genome mutational profiling using next-generation sequencing technologies
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Jane Grimwood Named HudsonAlpha Genomics Chair
City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using samples …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene …
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Scientific Advisory Committee
JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, guidance, … on the effective management and strategic objectives of the JGI. The SAC serves as the Institute's key external … and Environmental Research (BER) program, set the final sequence allocation for this program. …
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CSP New Investigator Call
… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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Building Sphagnum Genomic Resources
Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … genomics .” Understanding the nature and genetic basis of functional traits in sphagnum growth and … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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