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Extreme Scale De Novo Metagenome Assembly
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Omega: an Overlap-graph de novo Assembler for Metagenomics
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Assembling the Marine Metagenome, One Cell at a Time
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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … The cool thing about genomes is you can, well, if your assembly is good, you can see everything, right? You can see … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota
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BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It turned out that some of these were …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … Episode Transcript …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … program because it also allows scientists to understand the assembly, function, and the behavior of microbiomes. The …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … and advanced genomic analysis to explore the rich diversity of fungi and algae. These organisms play a critical role in …
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