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User Executive Committee Charter
… users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is … annual JGI User Meeting, as well as input on other aspects of the meeting such as duration, location, and cost; …
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Antonio Camargo
Antonio’s research is focusing on the development of new methods for the identification and classification of Mobile Genetic Elements from metagenomic data.  Antonio's …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … National Laboratory (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes …
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Estimating DNA coverage and abundance in metagenomes using a gamma approximation
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A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles
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DNA Sequence Analysis of an Inversion Hot Spot in Lobeliaceae Plastomes
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … descendants of ancestral genes are constructed at key phylogenetic nodes. These families allow easy access to … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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BBMerge – Accurate paired shotgun read merging via overlap
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … unlikely to regain once it is lost. Depending on the exact phylogenetic placement of Olpidium, it may mean that the …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and … a little bit more difficult. And so getting out clean DNA can also be a challenge there too. So JGI we really have …
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Exploring the Roles of DNA Methylation in the Metal-Reducing Bacterium Shewanella oneidensis MR-1
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