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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the … genome analysis, sequence-based genetic methods, and comparative developmental biology. In addition to this … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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Data Ecosystem
To expand access to integrated data, improve tools and … cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years … Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in Zostera marina …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … history and perennial lifecycle makes it important to study directly. The large and complex genome of M. sinensis … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. sacchariflorus …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … of Georgia, along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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JGI Mural
The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tāpirins) from Extremely Thermophilic Caldicellulosiruptor Species.
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … system for microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for …
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Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the … collaboratively developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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