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Exploring the Diversity of the American Prairie’s Switchgrass
… ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … among the major high-yield C4 crops, as are the candidate biofuel feedstocks Miscanthus and switchgrass.  Innumerable … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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iPHoP: A Matchmaker for Phages and their Hosts
… use a variety of approaches to match a virus with a potential host. This can result in different predictions. … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have … (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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Genome Analysis Reveals Diversity and Functional Potential of Novel Janthinobacterium Species From Subarctic Soils
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal … lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … lineages. To learn why, researchers analyzed 135 fungal genomes representing major fungal families, including those …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern … can inform the efficient production of plant-based biofuels and bioproducts. ( Learn more about OGG in  this … Phytozome . Researchers hope to have demonstrated the potential of ferns as sources of novel genetic material with …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … United States. They also provided multiple access points to the information. The team harnessed a …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … carbon and nitrogen cycles, break down plant mass (think biofuels ), enhance plant health, cause diseases, and … These specialized compounds enable organisms to respond to environmental stresses or mediate interactions with …
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Finding the Fermenters
… including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the process can result in other end products including biofuels and other bioproducts. Summary Researchers at the … roughly 300 combinations of metabolites. To demonstrate the potential utility of the browser, the team used  …
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