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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … interactions to untangle. Fungi work in cooperation to support a forest, and species vary across Earth’s … fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes we've sequenced, … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental Research … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … Researchers at CABBI and elsewhere are following up on these discoveries to develop new varieties of … as a source of renewable bioenergy. … This work was supported by the Energy Biosciences Institute and the DOE …
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to facilitate these efforts. Particular areas of emphasis will be the development of tools and infrastructure for microbiome data science, and …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a … by electricity anytime soon,” Stacey said when we caught up with him recently. “So, there’s going to be a need for … biofuels and that’s a good niche market for soybean.”  Upon its initial release in 2009, the soybean genome …
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Laboratory, are sharing their expertise in environmental genomics by writing for the column Genome Watch in  Nature … genomics and metagenomics of the microbiology-focused groups at the Joint Genome Institute, it is fantastic that …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … more than 100 algal genomes, compare them, and visualize supporting experimental data. The Impact Algae are important … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up genomics analysis to … and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … there were pieces from multiple boxes, including some duplicates, to sort through in order to form a single … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic … researchers to use them for engineering applications in support of advancing the bioeconomy.  This year’s project …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help … synthesis and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six …
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